PHYLOGENETIC ANALYSIS OF CHLOROPLAST DNA RESTRICTION SITE DATA AT HIGHER TAXONOMIC LEVELS: AN EXAMPLE FROM THE ASTERACEAE
نویسندگان
چکیده
منابع مشابه
Inferring phylogenetic history from restriction site associated DNA (RADseq)
Next-generation sequencing of restriction site associated DNA, or RADseq, was introduced in 2008 as a rapid genotyping method that does not require prior marker development. Developed for linkage mapping, genome-wide association, and population genetic studies, RADseq was initially viewed as ill-suited to interspecific phylogenetic questions. However, since 2012, approximately a dozen RADseq ph...
متن کاملPhylogenetics in Clarkia (Onagraceae): Restriction Site Mapping of Chloroplast DNA
Restriction site maps of chloroplast DNA (cpDNA), maternally inherited in Clarkia, were obtained in representative species of all seven diploid sections, the allotetraploid sect. Clarkia, and the outgroup Epilobium brachycarpum. CpDNA restriction site variation was analyzed by Wagner and Dollo parsimony, bootstrapping, and genetic distance methods. Four shortest Wagner trees, one of which was a...
متن کاملMajor lineages within Apiaceae subfamily Apioideae: a comparison of chloroplast restriction site and DNA sequence data.
Traditional sources of taxonomic characters in the large and taxonomically complex subfamily Apioideae (Apiaceae) have been confounding and no classification system of the subfamily has been widely accepted. A restriction site analysis of the chloroplast genome from 78 representatives of Apioideae and related groups provided a data matrix of 990 variable characters (750 of which were potentiall...
متن کاملHighly Variable Chloroplast Markers for Evaluating Plant Phylogeny at Low Taxonomic Levels and for DNA Barcoding
BACKGROUND At present, plant molecular systematics and DNA barcoding techniques rely heavily on the use of chloroplast gene sequences. Because of the relatively low evolutionary rates of chloroplast genes, there are very few choices suitable for molecular studies on angiosperms at low taxonomic levels, and for DNA barcoding of species. METHODOLOGY/PRINCIPAL FINDINGS We scanned the entire chlo...
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Asterids comprise 1/4-1/3 of all flowering plants and are classified in 10 orders and >100 families. The phylogeny of asterids is here explored with jackknife parsimony analysis of chloroplast DNA from 132 genera representing 103 families and all higher groups of asterids. Six different markers were used, three of the markers represent protein coding genes, rbcL, ndhF, and matK, and three other...
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ژورنال
عنوان ژورنال: Evolution
سال: 1990
ISSN: 0014-3820,1558-5646
DOI: 10.1111/j.1558-5646.1990.tb04314.x